JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAPG_chr18_10521027_10557764	0/0	t0007	2622	8	7	1	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0008	2621	6	0	0	6	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0009	2621	5	5	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0010	2621	3	3	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0011	2621	3	3	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0012	2621	3	0	0	0	1	2	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0013	2621	2	0	1	0	0	1	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0014	2618	2	1	1	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0015	2621	1	0	1	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0016	2621	1	0	0	1	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0017	2621	1	0	0	0	0	1	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0018	2621	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0019	2621	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0020	2622	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0021	2621	1	0	0	1	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0022	2621	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0023	2621	1	0	1	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0024	2621	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0025	2621	1	0	0	1	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0026	2621	1	0	0	1	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0027	2621	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0028	2621	1	0	0	0	0	1	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0029	2621	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0030	2621	1	0	0	0	0	1	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0031	2621	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0032	2622	1	0	0	1	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0033	2622	1	0	0	1	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0034	2622	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0035	2617	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0036	2621	1	0	0	1	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0037	2622	1	1	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0038	2621	1	0	0	0	0	1	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0039	2621	1	0	0	1	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPRT_chr8_143569785_143583330	0/1	t0001	66	396	90	71	178	14	42	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	t0002	66	6	5	1	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPRT_chr8_143569785_143583330	0/0	t0003	66	1	1	0	0	0	0	copy fasta	NAPRT	chr8	143569785	143583330
NAPSA_chr19_50353477_50370639	1/1	t0001	95	349	96	66	129	12	44	copy fasta	NAPSA	chr19	50353477	50370639
NAPSA_chr19_50353477_50370639	0/0	t0002	95	1	0	0	1	0	0	copy fasta	NAPSA	chr19	50353477	50370639
NARF_chr17_82453741_82495537	0/0	t0001	2444	178	26	33	99	3	17	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	1/1	t0002	2444	73	21	13	12	9	16	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0003	2444	11	11	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0004	2363	11	6	1	2	0	2	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0005	2445	9	0	3	3	0	3	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0006	2445	8	0	7	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0007	2445	7	1	1	4	0	1	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0008	2445	6	1	4	0	1	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0009	2445	5	0	3	2	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0010	2444	4	1	3	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0011	2444	4	0	0	4	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0012	2444	4	3	1	0	0	0	copy fasta	NARF	chr17	82453741	82495537