JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NARF_chr17_82453741_82495537	0/0	t0013	2444	3	3	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0014	2444	2	2	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0015	2444	2	2	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0016	2445	2	0	0	2	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0017	2446	2	0	1	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0018	2444	2	2	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0019	2444	2	2	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0020	2444	2	0	1	0	1	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0021	2445	1	0	0	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0022	2445	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0023	2446	1	0	1	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0024	2444	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0025	2445	1	0	0	0	0	1	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0026	2363	1	0	0	0	0	1	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0027	2363	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0028	2363	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0029	2444	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0030	2444	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0031	2444	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0032	2444	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0033	2444	1	0	0	1	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0034	2444	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0035	2444	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0036	2444	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0037	2444	1	0	0	0	0	1	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0038	2444	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARF_chr17_82453741_82495537	0/0	t0039	2445	1	1	0	0	0	0	copy fasta	NARF	chr17	82453741	82495537
NARS1_chr18_57595656_57626836	0/0	t0001	1116	171	24	46	72	8	21	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	1/1	t0002	1116	146	20	24	75	2	23	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	t0003	1116	37	30	6	0	0	1	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	t0004	1116	36	6	4	19	6	1	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	t0005	1116	11	11	0	0	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	t0006	1116	8	0	0	8	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	t0007	1117	3	0	0	3	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	t0008	1116	2	0	0	2	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	t0009	1116	2	0	0	2	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	t0010	1116	2	2	0	0	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	t0011	1116	1	0	0	1	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS1_chr18_57595656_57626836	0/0	t0012	1116	1	1	0	0	0	0	copy fasta	NARS1	chr18	57595656	57626836
NARS2_chr11_78430968_78579864	0/1	t0001	1079	139	33	23	63	2	17	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0002	1079	89	10	20	53	2	4	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	1/0	t0003	1079	24	17	2	3	0	1	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0004	1079	9	9	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0005	1079	8	2	1	4	0	1	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0006	1080	7	7	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0007	1079	6	6	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0008	1079	4	4	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0009	1079	1	0	1	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0010	1079	1	0	0	0	0	1	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0011	1079	1	1	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864