JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NARS2_chr11_78430968_78579864	0/0	t0012	1079	1	0	1	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0013	1079	1	1	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0014	1079	1	1	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0015	1079	1	1	0	0	0	0	copy fasta	NARS2	chr11	78430968	78579864
NARS2_chr11_78430968_78579864	0/0	t0016	1079	1	0	0	1	0	0	copy fasta	NARS2	chr11	78430968	78579864
NASP_chr1_45579041_45623893	1/0	t0001	859	267	57	57	122	5	25	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/1	t0002	859	24	5	10	0	3	5	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	t0003	859	5	5	0	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	t0004	859	2	2	0	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	t0005	859	1	0	1	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NASP_chr1_45579041_45623893	0/0	t0006	859	1	1	0	0	0	0	copy fasta	NASP	chr1	45579041	45623893
NAT10_chr11_34100629_34151908	1/1	t0001	896	168	61	24	50	7	24	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	t0002	896	67	8	20	28	1	10	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	t0003	896	7	7	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	t0004	896	6	6	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	t0005	896	5	5	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	t0006	896	3	0	0	3	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	t0007	896	2	0	2	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	t0008	896	1	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	t0009	896	1	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	t0010	896	1	1	0	0	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT10_chr11_34100629_34151908	0/0	t0011	896	1	0	0	1	0	0	copy fasta	NAT10	chr11	34100629	34151908
NAT14_chr19_55480188_55492566	1/0	t0001	730	222	39	29	124	11	18	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/1	t0002	730	106	8	22	43	6	26	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0003	730	59	35	15	7	1	1	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0004	730	7	6	1	0	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0005	730	6	0	4	2	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0006	730	6	6	0	0	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0007	730	2	2	0	0	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0008	730	2	0	0	2	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0009	730	2	2	0	0	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0010	730	1	0	0	1	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0011	730	1	0	0	1	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0012	730	1	1	0	0	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0013	730	1	0	0	1	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0014	730	1	0	0	1	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0015	730	1	0	0	0	0	1	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0016	730	1	1	0	0	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT14_chr19_55480188_55492566	0/0	t0017	730	1	0	1	0	0	0	copy fasta	NAT14	chr19	55480188	55492566
NAT16_chr7_101165496_101185293	0/1	t0001	1828	183	21	49	82	8	22	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0002	1840	96	31	6	43	3	13	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0003	1840	44	10	6	22	2	4	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0004	1840	38	19	2	14	2	1	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	1/0	t0005	1840	29	1	3	17	3	4	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0006	1828	5	0	5	0	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0007	1828	4	0	0	4	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0008	1828	4	3	0	0	0	1	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0009	1840	2	2	0	0	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0010	1840	2	2	0	0	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0011	1840	2	0	1	1	0	0	copy fasta	NAT16	chr7	101165496	101185293