Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AADACL2_chr3_151728927_151766339	0/0	t0067	3858	1	1	0	0	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL3_chr1_12711110_12733760	0/0	t0001	2832	174	21	48	80	9	16	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0002	2832	63	16	3	36	0	8	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0003	2832	26	0	4	19	0	3	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/1	t0004	2832	21	0	3	13	1	3	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0005	2832	16	4	3	4	3	2	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0006	2832	15	8	2	1	1	3	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0007	2832	13	5	7	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0008	2832	13	0	0	10	2	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0009	2832	8	1	0	6	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0010	2832	6	6	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0011	2832	6	0	0	6	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0012	2832	6	6	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0013	2832	5	0	0	5	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0014	2832	4	0	0	0	0	4	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0015	2832	4	3	1	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0016	2832	4	4	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0017	2832	4	3	1	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0018	2831	3	3	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0019	2832	3	3	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0020	2832	3	3	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0021	2832	2	0	0	2	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0022	2832	2	0	0	2	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0023	2832	2	0	0	2	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0024	2832	2	1	0	0	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0025	2832	2	2	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0026	2832	2	0	0	1	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0027	2832	1	0	0	0	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0028	2832	1	0	0	0	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0029	2819	1	0	1	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	1/0	t0030	2832	1	0	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0031	2832	1	0	0	0	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0032	2832	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0033	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0034	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0035	2832	1	0	1	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0036	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0037	2832	1	0	0	0	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0038	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0039	2832	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0040	2832	1	0	0	0	0	1	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0041	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0042	2832	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0043	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0044	2832	1	0	0	1	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0045	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0046	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0047	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0048	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760
AADACL3_chr1_12711110_12733760	0/0	t0049	2832	1	1	0	0	0	0	copy fasta	AADACL3	chr1	12711110	12733760