Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABLIM3_chr5_149136493_149265542	0/0	t0005	2388	12	11	1	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0006	2388	6	0	0	4	0	2	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0007	2388	2	0	1	0	0	1	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0008	2388	2	2	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0009	2388	1	1	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0010	2388	1	0	0	1	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0011	2388	1	1	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0012	2388	1	1	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0013	2388	1	1	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0014	2388	1	1	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0015	2388	1	0	0	1	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0016	2388	1	0	0	1	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0017	2388	1	1	0	0	0	0	copy fasta	ABLIM3	chr5	149136493	149265542
ABLIM3_chr5_149136493_149265542	0/0	t0018	2388	1	0	0	0	0	1	copy fasta	ABLIM3	chr5	149136493	149265542
ABRACL_chr6_139023745_139048302	0/1	t0001	537	290	38	53	159	13	26	copy fasta	ABRACL	chr6	139023745	139048302
ABRACL_chr6_139023745_139048302	1/0	t0002	537	113	52	7	45	0	8	copy fasta	ABRACL	chr6	139023745	139048302
ABRACL_chr6_139023745_139048302	0/0	t0003	537	22	1	6	11	0	4	copy fasta	ABRACL	chr6	139023745	139048302
ABRACL_chr6_139023745_139048302	0/0	t0004	537	20	0	4	5	1	10	copy fasta	ABRACL	chr6	139023745	139048302
ABRACL_chr6_139023745_139048302	0/0	t0005	537	2	2	0	0	0	0	copy fasta	ABRACL	chr6	139023745	139048302
ABRACL_chr6_139023745_139048302	0/0	t0006	537	1	1	0	0	0	0	copy fasta	ABRACL	chr6	139023745	139048302
ABRAXAS1_chr4_83454517_83490100	0/1	t0001	2979	140	11	20	93	2	13	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0002	2981	118	16	23	55	9	15	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0003	2982	27	26	1	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0004	2983	12	11	1	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0005	2982	11	11	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0006	2982	11	1	5	0	2	3	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0007	2981	7	6	1	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0008	2979	4	0	4	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0009	2982	4	4	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0010	2979	2	0	0	0	1	1	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0011	2978	2	0	0	1	0	1	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0012	2979	2	0	0	0	0	2	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0013	2981	2	0	0	0	0	2	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0014	2982	2	2	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0015	2979	1	0	0	1	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0016	2979	1	1	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0017	2979	1	0	1	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0018	2979	1	0	0	1	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0019	2979	1	1	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0020	2982	1	1	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0021	2981	1	1	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0022	2981	1	0	0	0	0	1	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0023	2981	1	0	0	1	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	1/0	t0024	2981	1	0	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0025	2982	1	1	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS1_chr4_83454517_83490100	0/0	t0026	2982	1	1	0	0	0	0	copy fasta	ABRAXAS1	chr4	83454517	83490100
ABRAXAS2_chr10_124796819_124841667	0/1	t0001	1707	274	28	51	141	13	40	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0002	1708	21	21	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	1/0	t0003	1708	11	4	3	2	0	1	copy fasta	ABRAXAS2	chr10	124796819	124841667
ABRAXAS2_chr10_124796819_124841667	0/0	t0004	1707	9	9	0	0	0	0	copy fasta	ABRAXAS2	chr10	124796819	124841667