Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARK2C_chr18_46329018_46468140	0/0	t0047	6764	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0048	6762	1	0	0	1	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0049	6762	1	0	1	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0050	6762	1	0	1	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0051	6756	1	0	1	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0052	6763	1	0	0	1	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0053	6762	1	0	0	0	0	1	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0054	6756	1	0	0	1	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0055	6757	1	0	0	0	0	1	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0056	6756	1	0	1	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0057	6762	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0058	6764	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0059	6756	1	0	0	1	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0060	6762	1	0	0	1	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0061	6756	1	0	0	1	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0062	6756	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0063	6756	1	0	0	1	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0064	6756	1	0	0	0	1	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0065	6762	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0066	6763	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0067	6762	1	0	1	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2N_chr18_46169034_46271992	0/1	t0001	4242	102	19	12	52	3	15	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0002	4243	68	2	14	44	2	6	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0003	4240	49	9	19	9	4	8	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0004	4236	17	0	1	15	0	1	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0005	4236	13	12	1	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0006	4242	10	4	3	2	0	1	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0007	4242	8	6	1	1	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0008	4240	6	0	2	0	1	3	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0009	4243	5	5	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0010	4242	5	5	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0011	4239	5	0	3	0	2	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0012	4242	4	4	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0013	4242	4	4	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0014	4243	3	3	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0015	4242	2	2	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0016	4242	2	2	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0017	4242	2	2	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0018	4242	1	0	1	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0019	4242	1	1	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0020	4236	1	1	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0021	4242	1	0	0	1	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0022	4240	1	0	0	1	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0023	4242	1	1	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0024	4242	1	0	0	1	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0025	4242	1	1	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0026	4240	1	0	1	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0027	4236	1	0	0	1	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	1/0	t0028	4242	1	0	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	t0029	4243	1	0	0	1	0	0	copy fasta	ARK2N	chr18	46169034	46271992