JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAT16_chr7_101165496_101185293	0/0	t0012	1828	2	0	0	2	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0013	1830	2	0	0	0	0	2	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0014	1840	2	1	1	0	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0015	1840	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0016	1828	1	0	0	0	0	1	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0017	1828	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0018	1828	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0019	1828	1	0	1	0	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0020	1840	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT16_chr7_101165496_101185293	0/0	t0021	1840	1	0	0	1	0	0	copy fasta	NAT16	chr7	101165496	101185293
NAT1_chr8_18205109_18228689	0/1	t0001	927	247	44	60	101	13	28	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	1/0	t0002	927	173	34	20	100	3	15	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0003	927	11	1	0	6	0	4	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0004	930	10	0	0	10	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0005	927	6	6	0	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0006	924	5	0	0	5	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0007	927	4	4	0	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0008	918	3	0	1	1	1	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0009	926	3	2	1	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0010	927	2	0	0	2	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0011	927	2	2	0	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0012	927	2	0	0	2	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0013	927	2	0	0	2	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0014	930	2	2	0	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0015	927	1	0	0	1	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0016	927	1	1	0	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0017	927	1	1	0	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0018	927	1	0	0	1	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0019	927	1	0	1	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0020	927	1	0	1	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0021	927	1	1	0	0	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0022	930	1	0	0	0	0	1	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0023	927	1	0	0	0	1	0	copy fasta	NAT1	chr8	18205109	18228689
NAT1_chr8_18205109_18228689	0/0	t0024	927	1	0	0	1	0	0	copy fasta	NAT1	chr8	18205109	18228689
NAT2_chr8_18386282_18406218	1/1	t0001	413	399	94	67	183	16	37	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	t0002	413	6	0	3	0	0	3	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	t0003	413	1	0	0	1	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	t0004	413	1	0	1	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT2_chr8_18386282_18406218	0/0	t0005	413	1	0	1	0	0	0	copy fasta	NAT2	chr8	18386282	18406218
NAT8L_chr4_2054327_2074089	0/1	t0001	5150	176	8	49	95	7	16	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0002	5148	55	7	14	31	0	3	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0003	5148	14	0	1	11	1	1	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0004	5150	11	10	1	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0005	5149	10	10	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0006	5148	8	8	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0007	5150	7	7	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0008	5151	5	0	0	2	0	3	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0009	5148	4	1	0	2	0	1	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0010	5150	4	3	1	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0011	5150	4	4	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089