JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAT8L_chr4_2054327_2074089	0/0	t0012	5150	3	3	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0013	5150	3	2	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0014	5150	3	0	0	3	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0015	5148	3	0	0	2	0	1	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0016	5149	2	0	0	2	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0017	5148	2	0	0	0	2	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	1/0	t0018	5148	2	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0019	5148	2	0	0	2	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0020	5147	2	2	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0021	5150	2	1	1	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0022	5150	2	2	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0023	5150	2	0	0	2	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0024	5150	2	0	0	2	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0025	5169	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0026	5177	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0027	5151	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0028	5151	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0029	5151	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0030	5148	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0031	5148	1	0	0	0	0	1	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0032	5148	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0033	5148	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0034	5148	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0035	5148	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0036	5147	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0037	5148	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0038	5148	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0039	5148	1	0	1	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0040	5150	1	0	1	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0041	5150	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0042	5150	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0043	5150	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0044	5148	1	0	0	0	0	1	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0045	5148	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0046	5148	1	0	0	0	1	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0047	5148	1	0	1	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0048	5150	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0049	5150	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0050	5150	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0051	5150	1	0	1	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0052	5150	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0053	5150	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0054	5150	1	0	1	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0055	5150	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0056	5150	1	0	0	0	0	1	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0057	5150	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0058	5150	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0059	5150	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0060	5150	1	0	0	0	1	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0061	5150	1	0	0	0	0	1	copy fasta	NAT8L	chr4	2054327	2074089