JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAT8L_chr4_2054327_2074089	0/0	t0062	5150	1	0	0	0	0	1	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0063	5150	1	0	1	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0064	5150	1	0	1	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0065	5150	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0066	5150	1	0	0	0	0	1	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0067	5149	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0068	5150	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0069	5148	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0070	5150	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0071	5150	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0072	5168	1	0	0	1	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0073	5136	1	1	0	0	0	0	copy fasta	NAT8L	chr4	2054327	2074089
NAT8L_chr4_2054327_2074089	0/0	t0074	5150	1	0	0	0	0	1	copy fasta	NAT8L	chr4	2054327	2074089
NAT8_chr2_73635723_73647422	0/1	t0001	402	202	27	39	95	9	31	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	1/0	t0002	402	93	16	3	70	0	3	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	t0003	402	81	42	22	2	3	12	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	t0004	402	11	10	1	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	t0005	402	2	0	0	2	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	t0006	402	2	0	0	2	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	t0007	402	1	0	0	1	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	t0008	402	1	1	0	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	t0009	402	1	0	0	1	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	t0010	402	1	0	0	1	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT8_chr2_73635723_73647422	0/0	t0011	402	1	0	1	0	0	0	copy fasta	NAT8	chr2	73635723	73647422
NAT9_chr17_74765529_74781345	1/0	t0001	1284	186	39	23	92	7	24	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0002	1284	102	13	29	43	6	11	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/1	t0003	1284	54	24	20	6	0	3	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0004	1284	8	0	0	4	0	4	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0005	1284	6	1	0	0	0	5	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0006	1284	5	0	0	5	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0007	1284	5	5	0	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0008	1284	4	0	1	0	2	1	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0009	1284	3	2	1	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0010	1284	2	0	2	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0011	1284	2	2	0	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0012	1284	1	0	0	0	1	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0013	1284	1	1	0	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0014	1284	1	1	0	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0015	1284	1	1	0	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0016	1284	1	0	0	1	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0017	1284	1	0	0	1	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0018	1266	1	0	0	1	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0019	1284	1	0	0	1	0	0	copy fasta	NAT9	chr17	74765529	74781345
NAT9_chr17_74765529_74781345	0/0	t0020	1284	1	1	0	0	0	0	copy fasta	NAT9	chr17	74765529	74781345
NATD1_chr17_21233870_21258410	0/1	t0001	4591	121	12	26	65	5	12	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	1/0	t0002	4590	83	4	13	57	2	6	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0003	4591	61	10	11	24	5	11	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0004	4591	30	2	18	0	3	7	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0005	4591	13	8	0	0	0	5	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0006	4589	9	7	2	0	0	0	copy fasta	NATD1	chr17	21233870	21258410