JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NATD1_chr17_21233870_21258410	0/0	t0057	4591	1	0	0	1	0	0	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0058	4591	1	1	0	0	0	0	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0059	4590	1	0	0	1	0	0	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0060	4589	1	1	0	0	0	0	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0061	4589	1	1	0	0	0	0	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0062	4590	1	0	1	0	0	0	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0063	4591	1	1	0	0	0	0	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0064	4590	1	0	0	0	0	1	copy fasta	NATD1	chr17	21233870	21258410
NATD1_chr17_21233870_21258410	0/0	t0065	4591	1	1	0	0	0	0	copy fasta	NATD1	chr17	21233870	21258410
NAV1_chr1_201534127_201831969	0/0	t0001	7380	19	8	2	4	2	3	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0002	7381	15	1	3	7	0	4	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0003	7404	7	0	0	4	0	3	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0004	7393	6	3	1	1	1	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0005	7404	6	0	4	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0006	7395	5	5	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0007	7402	5	0	2	3	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0008	7410	5	0	1	1	1	2	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0009	7404	5	0	0	3	0	2	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0010	7395	4	0	0	4	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0011	7394	4	1	2	0	1	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0012	7395	4	0	3	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0013	7379	3	1	1	0	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0014	7380	3	0	2	0	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0015	7381	3	3	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0016	7383	3	0	0	0	0	3	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0017	7396	3	3	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0018	7397	3	0	1	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0019	7406	3	0	0	3	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0020	7408	3	0	1	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0021	7404	3	3	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0022	7381	3	1	0	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0023	7396	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0024	7395	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	1/0	t0025	7397	2	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0026	7395	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0027	7397	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0028	7391	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0029	7393	2	0	0	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0030	7397	2	1	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0031	7381	2	2	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0032	7402	2	0	0	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0033	7400	2	0	0	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0034	7402	2	0	0	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0035	7402	2	0	0	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0036	7380	2	0	2	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0037	7404	2	0	0	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0038	7406	2	0	0	2	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0039	7402	2	0	0	1	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0040	7395	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0041	7397	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969