JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAV1_chr1_201534127_201831969	0/0	t0042	7402	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0043	7381	1	0	0	0	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0044	7399	1	0	0	0	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0045	7395	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0046	7398	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0047	7380	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0048	7380	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0049	7380	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0050	7379	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0051	7381	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0052	7386	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0053	7393	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0054	7397	1	0	0	0	1	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0055	7400	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0056	7399	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0057	7399	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0058	7395	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0059	7395	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0060	7397	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0061	7398	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0062	7399	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0063	7393	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0064	7393	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0065	7395	1	0	0	0	1	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0066	7395	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0067	7395	1	0	0	0	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0068	7397	1	0	0	0	1	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0069	7399	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0070	7382	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0071	7382	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0072	7400	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0073	7400	1	0	0	0	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0074	7404	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0075	7406	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0076	7394	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0077	7406	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0078	7408	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0079	7402	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0080	7396	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/1	t0081	7398	1	0	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0082	7398	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0083	7400	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0084	7397	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0085	7398	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0086	7380	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0087	7382	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0088	7381	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0089	7413	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0090	7395	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0091	7395	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969