JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAV1_chr1_201534127_201831969	0/0	t0092	7395	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0093	7404	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0094	7408	1	0	1	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0095	7400	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0096	7406	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0097	7396	1	1	0	0	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0098	7269	1	0	0	1	0	0	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0099	7380	1	0	0	0	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV1_chr1_201534127_201831969	0/0	t0100	7402	1	0	0	0	0	1	copy fasta	NAV1	chr1	201534127	201831969
NAV2_chr11_19707837_20126601	0/0	t0001	4202	43	9	19	2	6	7	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0002	4202	14	1	2	11	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0003	4206	11	6	0	4	0	1	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0004	4207	10	1	2	3	0	4	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0005	4203	9	6	3	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0006	4206	8	0	1	5	0	2	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0007	4207	4	4	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0008	4205	4	4	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0009	4202	4	4	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0010	4206	4	4	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0011	4206	3	3	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0012	4204	3	3	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0013	4205	3	1	0	2	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0014	4202	3	0	1	0	1	1	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0015	4205	3	3	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0016	4204	3	3	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0017	4202	2	2	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0018	4207	2	2	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0019	4201	2	1	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0020	4202	2	0	0	1	0	1	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0021	4206	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0022	4208	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0023	4206	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0024	4203	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0025	4203	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0026	4206	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0027	4203	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0028	4204	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0029	4203	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0030	4204	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0031	4204	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0032	4202	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0033	4201	1	0	0	0	1	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0034	4202	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0035	4208	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0036	4209	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0037	4204	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0038	4202	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0039	4203	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0040	4206	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0041	4206	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601