JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAV2_chr11_19707837_20126601	0/0	t0042	4202	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0043	4205	1	0	0	1	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0044	4206	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0045	4206	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0046	4202	1	0	1	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0047	4205	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0048	4205	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV2_chr11_19707837_20126601	0/0	t0049	4205	1	1	0	0	0	0	copy fasta	NAV2	chr11	19707837	20126601
NAV3_chr12_77825894_78218010	0/0	t0001	3057	22	0	5	14	1	2	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0002	3060	18	1	3	13	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/1	t0003	3053	15	0	3	7	1	3	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0004	3050	12	0	4	3	2	3	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0005	3053	6	1	0	3	1	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0006	3065	6	1	2	0	0	3	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0007	3068	6	2	2	2	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0008	3062	5	1	1	1	0	2	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0009	3060	5	0	1	2	0	2	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0010	3053	4	0	0	4	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0011	3052	4	0	1	2	1	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0012	3065	4	1	1	1	1	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0013	3065	3	2	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0014	3071	3	2	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0015	3070	3	3	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0016	3059	3	0	0	1	2	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0017	3053	2	0	0	0	0	2	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0018	3050	2	1	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0019	3067	2	2	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0020	3071	2	1	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0021	3068	2	2	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0022	3060	2	0	0	2	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0023	3069	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0024	3069	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0025	3062	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	1/0	t0026	3062	1	0	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0027	3062	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0028	3061	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0029	3062	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0030	3062	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0031	3063	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0032	3061	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0033	3050	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0034	3053	1	0	0	0	1	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0035	3051	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0036	3050	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0037	3050	1	0	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0038	3052	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0039	3065	1	0	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0040	3032	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0041	3065	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0042	3065	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010