JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAV3_chr12_77825894_78218010	0/0	t0043	3067	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0044	3061	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0045	3064	1	0	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0046	3065	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0047	3065	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0048	3066	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0049	3069	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0050	3067	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0051	3068	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0052	3070	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0053	3067	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0054	3068	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0055	3069	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0056	3070	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0057	3073	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0058	3072	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0059	3070	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0060	3070	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0061	3071	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0062	3076	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0063	3067	1	0	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0064	3071	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0065	3062	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0066	3057	1	0	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0067	3060	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0068	3059	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0069	3060	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0070	3060	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0071	3058	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0072	3058	1	0	0	0	0	1	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0073	3057	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0074	3060	1	0	1	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0075	3059	1	1	0	0	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0076	3062	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAV3_chr12_77825894_78218010	0/0	t0077	3059	1	0	0	1	0	0	copy fasta	NAV3	chr12	77825894	78218010
NAXD_chr13_110610545_110644996	1/0	t0001	1526	200	38	41	78	11	31	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/1	t0002	1524	35	0	16	10	1	7	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0003	1524	31	9	1	19	0	2	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0004	1524	28	3	9	12	4	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0005	1524	22	12	3	3	0	4	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0006	1524	22	0	4	18	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0007	1526	11	0	0	11	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0008	1524	9	8	1	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0009	1526	3	3	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0010	1524	3	3	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0011	1524	2	2	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0012	1526	2	0	0	2	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0013	1526	2	0	0	2	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0014	1524	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0015	1526	1	0	0	1	0	0	copy fasta	NAXD	chr13	110610545	110644996