JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBEAL2_chr3_46974666_47014701	0/0	t0006	578	2	0	0	0	0	2	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	t0007	578	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	t0008	594	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEA_chr13_34937270_35677736	1/0	t0001	2297	50	24	4	15	0	6	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/1	t0002	2297	16	7	0	2	2	4	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0003	2296	12	3	3	6	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0004	2285	11	9	0	2	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0005	2296	6	6	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0006	2285	5	4	1	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0007	2285	5	0	0	5	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0008	2297	2	0	0	0	0	2	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0009	2298	2	0	0	2	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0010	2297	2	2	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0011	2297	2	0	0	2	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0012	2285	1	0	1	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0013	2286	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0014	2285	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0015	2286	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0016	2284	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0017	2284	1	0	1	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0018	2297	1	0	0	0	0	1	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0019	2297	1	1	0	0	0	0	copy fasta	NBEA	chr13	34937270	35677736
NBEA_chr13_34937270_35677736	0/0	t0020	2297	1	0	0	0	0	1	copy fasta	NBEA	chr13	34937270	35677736
NBL1_chr1_19639311_19663452	0/1	t0001	1480	122	2	21	82	6	10	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0002	1482	54	4	10	31	3	6	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0003	1482	49	4	17	14	4	10	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0004	1482	40	24	9	0	2	5	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0005	1482	31	14	3	12	0	2	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0006	1480	24	10	3	10	0	1	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0007	1481	10	5	1	4	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0008	1480	8	6	2	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0009	1480	8	6	2	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0010	1481	5	1	0	4	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0011	1480	5	1	3	0	0	1	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0012	1480	4	4	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0013	1481	4	4	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0014	1480	4	0	1	2	0	1	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0015	1481	4	0	0	4	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0016	1482	4	0	1	0	1	2	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0017	1483	3	1	2	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0018	1481	3	0	1	0	0	2	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0019	1483	2	0	0	2	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0020	1481	2	2	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0021	1481	2	0	0	2	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0022	1483	2	1	1	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0023	1481	2	0	0	1	0	1	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0024	1483	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0025	1482	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0026	1481	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0027	1481	1	0	0	1	0	0	copy fasta	NBL1	chr1	19639311	19663452