JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBL1_chr1_19639311_19663452	0/0	t0028	1482	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0029	1482	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0030	1481	1	0	0	1	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0031	1480	1	0	0	0	0	1	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0032	1482	1	0	1	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0033	1480	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0034	1482	1	0	0	1	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0035	1482	1	1	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0036	1481	1	0	0	1	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0037	1481	1	0	0	1	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	1/0	t0038	1479	1	0	0	0	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0039	1480	1	0	0	1	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0040	1480	1	0	0	0	0	1	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0041	1483	1	0	0	0	0	1	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0042	1480	1	0	0	1	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBL1_chr1_19639311_19663452	0/0	t0043	1482	1	0	0	1	0	0	copy fasta	NBL1	chr1	19639311	19663452
NBN_chr8_89928331_89989667	0/0	t0001	2358	133	18	20	68	8	19	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	1/1	t0002	2358	107	6	25	51	8	15	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0003	2358	44	15	7	19	1	2	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0004	2358	42	0	8	32	1	1	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0005	2358	18	15	0	2	0	1	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0006	2358	10	9	1	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0007	2358	5	4	1	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0008	2358	5	3	2	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0009	2358	4	4	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0010	2358	3	0	0	3	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0011	2358	2	2	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0012	2358	2	0	0	0	0	2	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0013	2358	2	1	1	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0014	2358	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0015	2358	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0016	2358	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0017	2358	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0018	2358	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0019	2358	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0020	2358	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0021	2358	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0022	2358	1	0	1	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0023	2358	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0024	2358	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0025	2358	1	0	0	1	0	0	copy fasta	NBN	chr8	89928331	89989667
NBN_chr8_89928331_89989667	0/0	t0026	2358	1	1	0	0	0	0	copy fasta	NBN	chr8	89928331	89989667
NBPF10_chr1_146059711_146149804	0/0	t0001	1643	83	40	14	26	0	3	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0002	1643	56	5	29	8	6	8	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0003	1642	56	7	13	26	2	8	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	1/0	t0004	1643	47	4	4	31	3	4	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0005	1643	11	9	1	0	1	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0006	1643	7	4	0	1	0	2	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0007	1643	6	6	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0008	1642	2	0	1	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804