JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBPF10_chr1_146059711_146149804	0/0	t0009	1642	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0010	1643	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0011	1643	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0012	1643	1	0	0	0	0	1	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0013	1643	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0014	1643	1	0	0	0	0	1	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0015	1642	1	0	0	0	0	1	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0016	1642	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0017	1643	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0018	1643	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0019	1643	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0020	1643	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0021	1643	1	0	0	1	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0022	1643	1	0	1	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF10_chr1_146059711_146149804	0/0	t0023	1643	1	1	0	0	0	0	copy fasta	NBPF10	chr1	146059711	146149804
NBPF11_chr1_148097151_148157281	0/1	t0001	2826	183	22	40	97	4	19	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0002	2826	84	3	15	64	0	2	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0003	2826	22	13	3	0	0	6	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0004	2826	12	12	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	1/0	t0005	2826	10	2	5	0	2	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0006	2826	9	9	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0007	2826	9	0	0	9	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0008	2826	6	5	1	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0009	2826	4	4	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0010	2826	4	3	1	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0011	2826	3	3	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0012	2826	3	2	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0013	2826	3	0	2	0	1	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0014	2826	3	0	1	0	1	1	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0015	2826	2	1	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0016	2826	2	0	2	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0017	2826	2	2	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0018	2826	2	2	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0019	2826	2	0	0	2	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0020	2826	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0021	2826	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0022	2826	1	0	1	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0023	2826	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0024	2826	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0025	2826	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0026	2826	1	0	0	0	0	1	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0027	2826	1	0	0	0	1	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0028	2826	1	0	1	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0029	2826	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0030	2826	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0031	2826	1	0	0	0	0	1	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0032	2826	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0033	2826	1	0	0	0	1	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0034	2826	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0035	2826	1	0	0	0	0	1	copy fasta	NBPF11	chr1	148097151	148157281