JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBPF11_chr1_148097151_148157281	0/0	t0036	2826	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0037	2826	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0038	2826	1	0	0	0	0	1	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0039	2826	1	1	0	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0040	2826	1	0	1	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0041	2826	1	0	0	1	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF11_chr1_148097151_148157281	0/0	t0042	2826	1	0	1	0	0	0	copy fasta	NBPF11	chr1	148097151	148157281
NBPF12_chr1_146933324_147001198	0/0	t0001	3061	24	7	5	7	0	5	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0002	3057	22	0	7	15	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0003	3062	18	0	6	11	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	1/1	t0004	3062	16	5	5	0	4	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0005	3062	8	0	7	1	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0006	3062	3	3	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0007	3150	3	1	1	0	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0008	3057	3	3	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0009	3062	2	2	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0010	3062	2	2	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0011	3057	2	0	2	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0012	3062	2	2	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0013	3061	2	0	0	0	0	2	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0014	3062	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0015	3063	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0016	2974	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0017	3062	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0018	3062	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0019	3062	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0020	3062	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0021	3057	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0022	3057	1	0	0	0	0	1	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0023	3062	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0024	3062	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0025	3061	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0026	3150	1	1	0	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0027	3063	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF12_chr1_146933324_147001198	0/0	t0028	3062	1	0	1	0	0	0	copy fasta	NBPF12	chr1	146933324	147001198
NBPF14_chr1_148526385_148601011	1/1	t0001	1813	186	32	46	71	12	23	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0002	1813	5	5	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0003	1813	4	3	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0004	1813	3	2	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0005	1813	3	3	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0006	1813	2	0	2	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0007	1813	2	0	0	2	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0008	1813	2	0	0	0	0	2	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0009	1813	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0010	1813	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0011	1813	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0012	1813	1	0	0	0	0	1	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0013	1813	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0014	1813	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0015	1813	1	0	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011