JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBPF14_chr1_148526385_148601011	0/0	t0016	1813	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0017	1813	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0018	1813	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0019	1813	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0020	1813	1	0	1	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0021	1813	1	0	0	1	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0022	1813	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF14_chr1_148526385_148601011	0/0	t0023	1813	1	1	0	0	0	0	copy fasta	NBPF14	chr1	148526385	148601011
NBPF15_chr1_144416390_144466669	0/1	t0001	2850	324	59	72	149	15	28	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0002	2850	9	9	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0003	2850	8	8	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0004	2850	7	4	0	0	1	2	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0005	2850	4	0	0	4	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0006	2850	4	0	2	0	1	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0007	2854	3	0	0	0	0	3	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0008	2850	2	2	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0009	2850	2	0	2	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0010	2850	2	0	0	2	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0011	2850	2	0	1	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0012	2850	2	2	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0013	2854	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0014	2850	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0015	2850	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0016	2850	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0017	2850	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0018	2850	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0019	2850	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0020	2850	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0021	2850	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0022	2850	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0023	2850	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0024	2850	1	0	1	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0025	2850	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0026	2850	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	1/0	t0027	2850	1	0	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0028	2850	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0029	2850	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0030	2850	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0031	2850	1	0	0	0	0	1	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0032	2850	1	0	0	0	1	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0033	2850	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0034	2850	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0035	2850	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0036	2850	1	1	0	0	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF15_chr1_144416390_144466669	0/0	t0037	2850	1	0	0	1	0	0	copy fasta	NBPF15	chr1	144416390	144466669
NBPF19_chr1_149470045_149561361	1/1	t0001	2410	170	57	29	54	5	23	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0002	2410	45	3	6	31	1	4	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0003	2410	14	0	3	10	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0004	2407	8	1	2	2	1	2	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0005	2410	5	0	1	2	1	1	copy fasta	NBPF19	chr1	149470045	149561361