JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBPF19_chr1_149470045_149561361	0/0	t0006	2410	4	4	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0007	2410	3	0	0	3	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0008	2410	3	3	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0009	2410	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0010	2410	2	0	2	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0011	2410	2	0	1	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0012	2410	2	0	0	2	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0013	2407	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0014	2410	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0015	2410	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0016	2410	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0017	2410	1	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0018	2410	1	0	0	0	0	1	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0019	2410	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0020	2410	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0021	2410	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0022	2410	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0023	2410	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0024	2410	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0025	2410	1	0	0	1	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0026	2410	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0027	2410	1	0	1	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF19_chr1_149470045_149561361	0/0	t0028	2410	1	1	0	0	0	0	copy fasta	NBPF19	chr1	149470045	149561361
NBPF20_chr1_145285005_145430603	0/1	t0001	2641	3	0	1	1	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	1/0	t0002	2641	2	0	1	0	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF20_chr1_145285005_145430603	0/0	t0003	2641	1	0	0	1	0	0	copy fasta	NBPF20	chr1	145285005	145430603
NBPF3_chr1_21435137_21489900	0/0	t0001	1866	130	7	24	77	4	18	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0002	1866	83	27	10	45	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/1	t0003	1866	58	4	6	36	2	9	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0004	1866	20	1	6	13	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0005	1866	19	11	8	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0006	1866	15	1	6	2	3	3	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0007	1866	12	9	2	0	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0008	1866	9	7	0	0	2	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0009	1866	8	7	1	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0010	1866	6	6	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0011	1866	5	0	2	0	1	2	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	1/0	t0012	1866	5	3	1	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0013	1866	4	4	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0014	1866	3	0	0	1	0	2	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0015	1866	3	0	0	3	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0016	1866	2	1	0	0	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0017	1866	2	0	0	0	2	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0018	1866	1	0	0	0	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0019	1866	1	0	1	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0020	1866	1	0	0	0	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0021	1866	1	0	0	0	0	1	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0022	1866	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0023	1866	1	0	0	1	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0024	1866	1	0	1	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900