JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBPF3_chr1_21435137_21489900	0/0	t0025	1866	1	1	0	0	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0026	1866	1	0	0	1	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF3_chr1_21435137_21489900	0/0	t0027	1866	1	0	0	1	0	0	copy fasta	NBPF3	chr1	21435137	21489900
NBPF4_chr1_108217464_108249076	1/0	t0001	1455	66	15	11	26	5	8	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/1	t0002	1455	41	13	9	13	2	3	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	t0003	1455	9	2	1	4	1	1	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	t0004	1455	9	2	2	3	0	2	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	t0005	1455	3	3	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	t0006	1455	2	2	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	t0007	1455	1	0	0	1	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	t0008	1455	1	0	1	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	t0009	1455	1	0	0	1	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF4_chr1_108217464_108249076	0/0	t0010	1455	1	1	0	0	0	0	copy fasta	NBPF4	chr1	108217464	108249076
NBPF6_chr1_108445343_108476920	0/1	t0001	1440	16	10	3	0	1	1	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0002	1440	14	6	1	3	1	3	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0003	1440	12	3	3	5	0	1	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0004	1440	7	1	4	1	0	1	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0005	1440	5	5	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0006	1440	2	0	1	1	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	1/0	t0007	1440	2	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0008	1440	2	2	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0009	1440	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0010	1440	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0011	1440	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0012	1440	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0013	1440	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0014	1440	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0015	1440	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF6_chr1_108445343_108476920	0/0	t0016	1440	1	1	0	0	0	0	copy fasta	NBPF6	chr1	108445343	108476920
NBPF8_chr1_120410035_120474676	0/0	t0001	4430	40	0	5	30	1	4	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0002	4428	34	5	13	2	6	8	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	1/1	t0003	4428	25	0	3	15	1	4	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0004	4428	23	2	14	1	1	5	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0005	4428	17	3	0	14	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0006	4430	10	1	1	6	0	2	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0007	4428	10	2	4	4	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0008	4428	9	8	1	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0009	4430	8	0	7	0	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0010	4430	7	0	0	7	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0011	4428	7	0	1	0	3	3	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0012	4430	7	0	0	7	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0013	4428	6	6	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0014	4428	5	5	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0015	4428	5	5	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0016	4428	5	0	0	0	0	5	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0017	4430	4	4	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0018	4430	4	4	0	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0019	4428	3	2	1	0	0	0	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0020	4430	2	0	0	1	0	1	copy fasta	NBPF8	chr1	120410035	120474676
NBPF8_chr1_120410035_120474676	0/0	t0021	4428	2	0	1	0	1	0	copy fasta	NBPF8	chr1	120410035	120474676