JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBPF9_chr1_149047186_149108551	0/0	t0003	4564	34	2	10	16	2	4	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	1/0	t0004	4564	31	6	4	10	6	4	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0005	4564	10	0	0	10	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0006	4554	9	9	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0007	4565	6	1	2	3	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0008	4565	5	4	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0009	4564	5	0	0	5	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0010	4556	5	4	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0011	4562	4	4	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0012	4565	4	0	0	4	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/1	t0013	4565	4	1	1	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0014	4565	4	0	2	0	1	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0015	4564	3	0	2	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0016	4564	3	0	1	0	1	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0017	4564	3	0	3	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0018	4556	3	0	0	3	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0019	4556	3	3	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0020	4565	3	3	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0021	4565	3	1	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0022	4565	2	2	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0023	4564	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0024	4564	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0025	4564	2	0	0	0	0	2	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0026	4564	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0027	4564	2	1	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0028	4564	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0029	4564	2	0	2	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0030	4565	2	0	2	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0031	4556	2	2	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0032	4556	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0033	4556	2	0	0	0	0	2	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0034	4556	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0035	4552	2	0	0	2	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0036	4565	2	0	1	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0037	4551	2	2	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0038	4565	2	0	0	1	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0039	4565	2	2	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0040	4541	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0041	4565	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0042	4564	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0043	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0044	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0045	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0046	4564	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0047	4564	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0048	4564	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0049	4564	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0050	4564	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0051	4564	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0052	4564	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551