Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARL10_chr5_176360487_176386909	0/0	t0048	10097	2	0	2	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0049	10085	2	0	0	2	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0050	10097	2	0	0	2	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0051	10097	2	0	0	1	0	1	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0052	10097	2	0	2	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0053	10096	2	0	0	2	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0054	10100	2	0	2	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0055	10106	2	2	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0056	10102	2	2	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0057	10094	2	2	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0058	10058	2	0	0	0	2	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0059	10062	2	0	0	0	2	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0060	10096	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0061	10092	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0062	10096	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0063	10075	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0064	10089	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0065	10123	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0066	10097	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0067	10093	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0068	10098	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0069	10098	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0070	10106	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0071	10100	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0072	10103	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0073	10099	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0074	10085	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0075	10089	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0076	10089	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0077	10077	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0078	10084	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0079	10081	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0080	10087	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0081	10101	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0082	10090	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0083	10093	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0084	10094	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0085	10097	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0086	10092	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0087	10091	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0088	10090	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0089	10089	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0090	10090	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0091	10090	1	0	1	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0092	10095	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0093	10094	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0094	10093	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0095	10097	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0096	10088	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	t0097	10086	1	0	0	1	0	0	copy fasta	ARL10	chr5	176360487	176386909