JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBPF9_chr1_149047186_149108551	0/0	t0053	4564	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0054	4565	1	0	0	0	1	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0055	4564	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0056	4564	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0057	4564	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0058	4564	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0059	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0060	4556	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0061	4554	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0062	4556	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0063	4556	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0064	4556	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0065	4539	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0066	4556	1	0	0	0	1	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0067	4556	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0068	4556	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0069	4554	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0070	4556	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0071	4556	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0072	4556	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0073	4556	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0074	4556	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0075	4362	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0076	4556	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0077	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0078	4565	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0079	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0080	4565	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0081	4565	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0082	4565	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0083	4564	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0084	4565	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0085	4565	1	0	1	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0086	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0087	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0088	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0089	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0090	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0091	4565	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0092	4564	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0093	4565	1	0	0	1	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0094	4565	1	0	0	0	0	1	copy fasta	NBPF9	chr1	149047186	149108551
NBPF9_chr1_149047186_149108551	0/0	t0095	4565	1	1	0	0	0	0	copy fasta	NBPF9	chr1	149047186	149108551
NBR1_chr17_43166214_43216688	1/0	t0001	1713	154	36	31	69	5	12	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/1	t0002	1713	116	18	23	52	5	17	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0003	1714	28	25	1	0	0	2	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0004	1713	3	3	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0005	1713	2	0	0	0	0	2	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0006	1714	2	2	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0007	1713	2	2	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688