JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBR1_chr17_43166214_43216688	0/0	t0008	1713	1	1	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0009	1713	1	1	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0010	1713	1	1	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0011	1713	1	0	0	0	0	1	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0012	1713	1	1	0	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0013	1713	1	0	0	1	0	0	copy fasta	NBR1	chr17	43166214	43216688
NBR1_chr17_43166214_43216688	0/0	t0014	1713	1	0	1	0	0	0	copy fasta	NBR1	chr17	43166214	43216688
NCALD_chr8_101681542_101795969	0/0	t0001	2895	116	28	28	47	1	12	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/1	t0002	2895	52	4	11	31	0	5	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0003	2895	27	0	4	16	0	7	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0004	2895	20	7	2	5	1	5	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0005	2890	14	9	0	4	0	1	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	1/0	t0006	2895	13	0	0	12	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0007	2895	10	8	0	0	0	2	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0008	2896	9	0	0	9	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0009	2895	7	7	0	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0010	2895	6	3	2	0	0	1	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0011	2895	3	3	0	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0012	2895	3	0	2	1	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0013	2895	2	2	0	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0014	2895	2	2	0	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0015	2895	2	2	0	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0016	2895	2	1	1	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0017	2895	2	0	0	2	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0018	2891	2	2	0	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0019	2895	1	0	0	1	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0020	2895	1	1	0	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0021	2895	1	0	0	1	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0022	2890	1	1	0	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0023	2896	1	0	0	0	0	1	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0024	2896	1	0	0	1	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0025	2896	1	1	0	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCALD_chr8_101681542_101795969	0/0	t0026	2895	1	1	0	0	0	0	copy fasta	NCALD	chr8	101681542	101795969
NCAM1_chr11_112956420_113283436	0/0	t0001	3243	62	5	14	35	4	4	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0002	3244	29	2	8	17	0	2	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0003	3244	19	4	1	14	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0004	3246	12	6	3	1	0	2	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0005	3245	12	1	2	5	1	3	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0006	3248	9	8	1	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0007	3249	8	1	3	0	3	1	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0008	3247	7	5	1	0	1	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0009	3231	7	0	0	7	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0010	3243	5	3	1	0	0	1	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0011	3242	4	0	1	3	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0012	3243	4	0	0	4	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0013	3243	4	0	2	2	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0014	3246	3	3	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0015	3247	3	2	1	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0016	3232	3	0	0	3	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0017	3246	3	0	2	0	0	1	copy fasta	NCAM1	chr11	112956420	113283436