JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCAM1_chr11_112956420_113283436	0/0	t0018	3244	3	2	0	0	0	1	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0019	3248	3	2	1	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0020	3250	2	0	0	0	1	1	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0021	3244	2	1	1	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0022	3250	2	1	1	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0023	3247	2	0	0	0	0	2	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0024	3251	2	0	1	0	0	1	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0025	3249	2	0	2	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0026	3247	1	0	0	0	1	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0027	3249	1	0	1	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0028	3246	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0029	3245	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0030	3246	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0031	3250	1	0	0	0	1	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0032	3249	1	0	0	0	0	1	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0033	3247	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0034	3246	1	0	1	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0035	3246	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0036	3251	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0037	3248	1	0	1	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0038	3246	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0039	3247	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0040	3243	1	0	0	0	0	1	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0041	3243	1	0	0	1	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0042	3243	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0043	3243	1	0	0	0	0	1	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0044	3243	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0045	3231	1	0	0	1	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0046	3243	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0047	3249	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0048	3247	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0049	3232	1	0	0	1	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0050	3252	1	1	0	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0051	3221	1	0	0	1	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0052	3245	1	0	1	0	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0053	3234	1	0	0	1	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0054	3232	1	0	0	1	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM1_chr11_112956420_113283436	0/0	t0055	3244	1	0	0	1	0	0	copy fasta	NCAM1	chr11	112956420	113283436
NCAM2_chr21_20993409_21548329	0/0	t0001	5528	26	1	6	15	0	4	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0002	5526	17	14	2	0	0	1	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0003	5527	14	5	4	2	1	2	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0004	5527	12	11	1	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0005	5525	10	8	2	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0006	5517	5	1	0	4	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0007	5521	3	0	2	0	0	1	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0008	5525	3	3	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0009	5515	3	3	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0010	5525	2	1	1	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0011	5527	2	2	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0012	5525	2	2	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329