JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCAM2_chr21_20993409_21548329	0/0	t0013	5527	2	2	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0014	5521	2	2	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0015	5527	2	2	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0016	5527	2	0	1	0	0	1	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0017	5525	2	2	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0018	5526	2	2	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0019	5528	1	0	0	1	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0020	5528	1	0	0	0	0	1	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0021	5528	1	0	1	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0022	5528	1	0	0	0	0	1	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0023	5526	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0024	5525	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0025	5528	1	0	0	1	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0026	5527	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0027	5527	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0028	5527	1	0	0	1	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0029	5527	1	0	1	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0030	5527	1	0	0	0	0	1	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0031	5527	1	0	0	0	0	1	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0032	5525	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0033	5525	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0034	5525	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0035	5527	1	0	1	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0036	5528	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0037	5526	1	0	0	0	1	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0038	5526	1	0	0	0	0	1	copy fasta	NCAM2	chr21	20993409	21548329
NCAM2_chr21_20993409_21548329	0/0	t0039	5527	1	1	0	0	0	0	copy fasta	NCAM2	chr21	20993409	21548329
NCAN_chr19_19206958_19257233	1/1	t0001	2437	189	38	42	72	8	27	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0002	2435	56	33	12	0	2	9	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0003	2435	26	0	9	15	0	2	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0004	2433	13	1	0	10	0	2	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0005	2435	6	6	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0006	2437	6	6	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0007	2437	4	4	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0008	2435	3	0	0	3	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0009	2437	2	0	0	2	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0010	2435	2	2	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0011	2437	2	1	1	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0012	2437	1	0	1	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0013	2437	1	0	0	1	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0014	2435	1	1	0	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0015	2437	1	0	0	0	0	1	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0016	2437	1	0	0	1	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0017	2437	1	0	1	0	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0018	2437	1	0	0	1	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0019	2433	1	0	0	0	0	1	copy fasta	NCAN	chr19	19206958	19257233
NCAN_chr19_19206958_19257233	0/0	t0020	2437	1	0	0	1	0	0	copy fasta	NCAN	chr19	19206958	19257233
NCAPD2_chr12_6489102_6536955	1/0	t0001	620	131	16	21	68	10	15	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/1	t0002	620	110	33	25	38	3	10	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0003	620	96	8	15	60	3	10	copy fasta	NCAPD2	chr12	6489102	6536955