JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCAPD2_chr12_6489102_6536955	0/0	t0004	620	43	1	8	27	0	7	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0005	621	11	9	2	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0006	621	11	6	1	0	0	4	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0007	619	6	3	2	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0008	620	6	5	0	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0009	620	4	4	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0010	621	3	3	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0011	620	3	1	1	0	0	1	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0012	621	2	2	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0013	621	2	0	0	2	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0014	619	2	0	1	1	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0015	620	1	1	0	0	0	0	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD2_chr12_6489102_6536955	0/0	t0016	620	1	0	0	0	0	1	copy fasta	NCAPD2	chr12	6489102	6536955
NCAPD3_chr11_134145113_134228967	0/0	t0001	2877	98	6	26	52	2	12	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0002	2873	53	1	1	43	0	8	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	1/0	t0003	2873	46	12	12	10	4	7	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0004	2873	17	11	2	1	1	2	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0005	2874	14	0	0	14	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0006	2873	11	5	4	0	2	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0007	2875	11	10	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0008	2877	11	0	6	5	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0009	2873	10	0	2	6	0	2	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0010	2877	8	0	5	3	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0011	2873	7	0	0	7	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0012	2873	7	6	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0013	2877	5	5	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0014	2874	5	5	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0015	2873	5	5	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0016	2872	4	3	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0017	2874	4	3	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0018	2873	4	3	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0019	2874	3	3	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0020	2873	3	3	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0021	2873	2	0	0	2	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0022	2872	2	2	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0023	2877	2	0	0	2	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0024	2877	2	2	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0025	2873	2	0	2	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0026	2873	2	1	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0027	2873	2	0	2	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0028	2873	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0029	2873	1	0	0	0	1	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0030	2875	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0031	2874	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0032	2872	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0033	2875	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0034	2873	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0035	2873	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0036	2878	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0037	2877	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967