JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCAPD3_chr11_134145113_134228967	0/0	t0038	2873	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0039	2873	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0040	2873	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0041	2872	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0042	2874	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0043	2874	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0044	2874	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0045	2873	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0046	2872	1	0	0	0	0	1	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0047	2873	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0048	2873	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0049	2873	1	0	0	0	0	1	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0050	2872	1	0	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/1	t0051	2872	1	0	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0052	2877	1	0	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0053	2877	1	0	1	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0054	2877	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0055	2873	1	0	0	1	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0056	2873	1	1	0	0	0	0	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPD3_chr11_134145113_134228967	0/0	t0057	2873	1	0	0	0	0	1	copy fasta	NCAPD3	chr11	134145113	134228967
NCAPG2_chr7_158626169_158709804	1/1	t0001	618	224	68	39	90	5	20	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	t0002	618	144	22	31	64	7	20	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	t0003	618	4	0	0	4	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	t0004	618	2	0	0	2	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	t0005	618	2	2	0	0	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	t0006	618	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG2_chr7_158626169_158709804	0/0	t0007	618	1	0	0	1	0	0	copy fasta	NCAPG2	chr7	158626169	158709804
NCAPG_chr4_17805979_17849865	0/0	t0001	1540	117	14	31	60	1	11	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/1	t0002	1540	111	13	23	56	3	15	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0003	1540	46	4	14	17	2	9	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0004	1540	25	16	2	5	0	2	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0005	1540	24	3	0	15	0	6	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0006	1541	16	14	1	0	0	1	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0007	1541	15	0	0	15	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	1/0	t0008	1540	13	12	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0009	1541	11	11	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0010	1540	3	3	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0011	1540	3	0	0	3	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0012	1540	2	0	0	0	2	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0013	1540	2	2	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0014	1540	2	0	0	2	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0015	1540	1	0	0	1	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0016	1540	1	0	0	1	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0017	1540	1	1	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0018	1540	1	0	1	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0019	1540	1	0	0	1	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPG_chr4_17805979_17849865	0/0	t0020	1541	1	1	0	0	0	0	copy fasta	NCAPG	chr4	17805979	17849865
NCAPH2_chr22_50503224_50529780	0/1	t0001	1520	240	52	50	104	8	25	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	1/0	t0002	1520	106	26	21	44	2	12	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0003	1520	13	11	2	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780