JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCAPH2_chr22_50503224_50529780	0/0	t0004	1520	8	0	6	0	2	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0005	1520	6	1	0	2	1	2	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0006	1520	2	0	0	0	0	2	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0007	1520	2	0	0	0	2	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0008	1520	1	0	0	0	0	1	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0009	1520	1	1	0	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0010	1520	1	1	0	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0011	1520	1	1	0	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0012	1520	1	1	0	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0013	1555	1	0	1	0	0	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH2_chr22_50503224_50529780	0/0	t0014	1520	1	0	0	0	1	0	copy fasta	NCAPH2	chr22	50503224	50529780
NCAPH_chr2_96330766_96382091	0/0	t0001	3805	291	72	44	137	7	31	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0002	3805	16	0	8	8	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0003	3806	10	6	4	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0004	3805	8	0	0	8	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	1/1	t0005	3805	7	0	2	0	3	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0006	3805	6	0	4	2	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0007	3805	3	0	0	3	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0008	3806	2	2	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0009	3806	2	2	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0010	3805	2	0	0	2	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0011	3805	2	2	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0012	3805	1	1	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0013	3805	1	1	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0014	3805	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0015	3805	1	0	0	1	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0016	3805	1	1	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0017	3805	1	0	0	0	0	1	copy fasta	NCAPH	chr2	96330766	96382091
NCAPH_chr2_96330766_96382091	0/0	t0018	3805	1	1	0	0	0	0	copy fasta	NCAPH	chr2	96330766	96382091
NCBP1_chr9_97628821_97678748	1/1	t0001	2611	251	37	45	124	12	31	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0002	2611	45	12	12	20	0	1	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0003	2608	15	0	2	4	2	7	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0004	2606	15	14	1	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0005	2611	13	12	1	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0006	2610	6	4	2	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0007	2615	5	5	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0008	2611	3	0	0	3	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0009	2611	1	0	0	1	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0010	2611	1	1	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0011	2611	1	0	1	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0012	2611	1	1	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0013	2611	1	1	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0014	2611	1	0	0	1	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0015	2611	1	1	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0016	2611	1	0	0	0	0	1	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0017	2611	1	1	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0018	2611	1	1	0	0	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP1_chr9_97628821_97678748	0/0	t0019	2611	1	0	0	1	0	0	copy fasta	NCBP1	chr9	97628821	97678748
NCBP2AS2_chr3_196937674_196948543	0/1	t0001	573	206	38	34	119	1	13	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	0/0	t0002	573	97	44	25	16	5	7	copy fasta	NCBP2AS2	chr3	196937674	196948543