JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCBP2AS2_chr3_196937674_196948543	0/0	t0003	573	55	2	10	28	9	6	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	1/0	t0004	571	51	3	10	21	2	14	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	0/0	t0005	573	12	0	0	12	0	0	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	0/0	t0006	571	2	2	0	0	0	0	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	0/0	t0007	573	2	1	1	0	0	0	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	0/0	t0008	573	1	1	0	0	0	0	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	0/0	t0009	573	1	1	0	0	0	0	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	0/0	t0010	573	1	0	0	0	1	0	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	0/0	t0011	571	1	0	0	1	0	0	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2AS2_chr3_196937674_196948543	0/0	t0012	573	1	0	0	1	0	0	copy fasta	NCBP2AS2	chr3	196937674	196948543
NCBP2L_chrX_107772733_107800829	1/1	t0001	1346	198	17	37	113	8	21	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0002	1346	64	27	8	19	4	6	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0003	1346	13	12	1	0	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0004	1346	11	10	1	0	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0005	1346	5	5	0	0	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0006	1346	5	0	0	5	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0007	1346	2	2	0	0	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0008	1346	1	0	1	0	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0009	1346	1	1	0	0	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0010	1346	1	0	0	0	1	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0011	1346	1	0	0	0	0	1	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2L_chrX_107772733_107800829	0/0	t0012	1346	1	0	0	1	0	0	copy fasta	NCBP2L	chrX	107772733	107800829
NCBP2_chr3_196930406_196947528	0/1	t0001	1632	188	29	30	117	1	10	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0002	1632	82	20	13	29	9	11	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0003	1631	51	3	9	21	2	16	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0004	1632	27	5	14	0	5	3	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0005	1632	12	0	0	11	0	1	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0006	1632	10	10	0	0	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0007	1632	9	8	0	0	0	1	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0008	1632	8	0	7	0	1	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0009	1632	6	0	0	6	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0010	1632	5	4	1	0	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0011	1632	4	4	0	0	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0012	1632	4	4	0	0	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0013	1632	4	4	0	0	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0014	1632	2	2	0	0	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	1/0	t0015	1631	2	0	1	0	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0016	1632	1	1	0	0	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0017	1632	1	0	0	1	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0018	1632	1	0	0	1	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0019	1632	1	0	0	1	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0020	1632	1	0	0	1	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP2_chr3_196930406_196947528	0/0	t0021	1632	1	0	1	0	0	0	copy fasta	NCBP2	chr3	196930406	196947528
NCBP3_chr17_3797158_3851246	0/0	t0001	10910	71	3	14	36	4	14	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0002	10910	33	0	8	21	0	4	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	1/0	t0003	10910	13	0	1	9	1	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/1	t0004	10910	12	0	6	2	2	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0005	10910	11	0	0	10	1	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0006	10910	11	9	2	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0007	10921	9	9	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246