JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCBP3_chr17_3797158_3851246	0/0	t0008	10910	8	0	0	8	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0009	10910	8	0	4	4	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0010	10910	7	0	0	7	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0011	10910	7	0	2	4	0	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0012	10910	5	3	0	2	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0013	10910	5	5	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0014	10910	5	4	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0015	10921	4	4	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0016	10910	4	4	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0017	10909	4	0	0	3	0	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0018	10922	4	1	0	0	0	3	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0019	10910	3	3	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0020	10910	3	0	3	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0021	10911	3	0	2	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0022	10910	3	3	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0023	10910	3	3	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0024	10910	3	0	0	3	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0025	10910	3	0	0	3	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0026	10920	3	3	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0027	10910	2	0	2	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0028	10911	2	0	0	2	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0029	10921	2	1	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0030	10909	2	0	0	0	2	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0031	10910	2	2	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0032	10910	2	0	0	2	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0033	10910	2	2	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0034	10910	2	0	0	0	2	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0035	10910	2	1	0	0	0	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0036	10910	2	0	0	2	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0037	10911	2	2	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0038	10911	2	0	0	2	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0039	10910	2	0	1	0	0	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0040	10910	2	0	0	2	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0041	10911	2	0	0	2	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0042	10911	2	0	2	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0043	10910	2	0	0	0	0	2	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0044	10922	2	0	2	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0045	10922	2	2	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0046	10920	2	2	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0047	10922	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0048	10910	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0049	10910	1	0	0	0	0	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0050	10921	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0051	10910	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0052	10910	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0053	10920	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0054	10910	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0055	10922	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0056	10910	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0057	10910	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246