JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCBP3_chr17_3797158_3851246	0/0	t0108	10911	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0109	10911	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0110	10910	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0111	10910	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0112	10910	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0113	10910	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0114	10910	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0115	10922	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0116	10922	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0117	10922	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0118	10922	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0119	10921	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0120	10922	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0121	10920	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0122	10921	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0123	10920	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0124	10920	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0125	10922	1	0	0	0	0	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0126	10910	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0127	10910	1	0	0	0	0	1	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0128	10910	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0129	10921	1	1	0	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0130	10910	1	0	0	1	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCBP3_chr17_3797158_3851246	0/0	t0131	10911	1	0	1	0	0	0	copy fasta	NCBP3	chr17	3797158	3851246
NCCRP1_chr19_39191964_39206884	1/1	t0001	1148	203	51	40	73	10	27	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0002	1149	130	6	29	77	4	14	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0003	1150	12	1	8	1	2	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0004	1147	9	9	0	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0005	1148	8	8	0	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0006	1148	3	3	0	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0007	1148	3	3	0	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0008	1147	2	2	0	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0009	1148	2	1	1	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0010	1148	1	1	0	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0011	1148	1	0	0	0	0	1	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0012	1148	1	0	0	1	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0013	1148	1	1	0	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0014	1149	1	0	0	1	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0015	1149	1	0	0	1	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0016	1149	1	1	0	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCCRP1_chr19_39191964_39206884	0/0	t0017	1148	1	1	0	0	0	0	copy fasta	NCCRP1	chr19	39191964	39206884
NCDN_chr1_35552799_35571779	0/0	t0001	1504	55	1	4	46	0	4	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0002	1500	50	11	9	28	0	2	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	1/0	t0003	1509	50	6	13	12	6	12	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0004	1507	29	7	3	9	2	8	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0005	1511	26	4	8	7	1	6	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0006	1506	11	0	4	7	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0007	1503	11	2	0	9	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0008	1506	9	5	0	2	2	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0009	1505	8	2	0	6	0	0	copy fasta	NCDN	chr1	35552799	35571779