JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCDN_chr1_35552799_35571779	0/1	t0010	1513	8	0	4	2	0	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0011	1505	8	3	0	2	2	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0012	1500	6	5	1	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0013	1510	6	2	2	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0014	1503	6	3	3	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0015	1504	5	4	1	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0016	1502	5	4	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0017	1503	5	2	0	3	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0018	1509	4	2	0	1	0	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0019	1501	4	1	1	0	1	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0020	1515	4	2	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0021	1507	4	0	0	4	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0022	1509	3	0	3	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0023	1502	3	2	1	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0024	1507	3	1	0	1	0	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0025	1507	3	3	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0026	1505	3	3	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0027	1503	3	1	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0028	1501	3	3	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0029	1502	3	0	0	2	0	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0030	1506	2	0	2	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0031	1510	2	0	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0032	1506	2	0	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0033	1500	2	0	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0034	1510	2	2	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0035	1502	2	1	0	0	0	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0036	1513	2	0	2	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0037	1503	2	0	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0038	1501	2	0	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0039	1512	2	0	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0040	1515	2	0	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0041	1509	2	0	0	2	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0042	1508	2	1	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0043	1507	1	0	1	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0044	1505	1	0	0	0	0	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0045	1508	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0046	1504	1	0	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0047	1512	1	0	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0048	1508	1	0	0	0	0	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0049	1508	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0050	1515	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0051	1511	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0052	1507	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0053	1511	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0054	1503	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0055	1501	1	0	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0056	1499	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0057	1495	1	0	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0058	1493	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0059	1504	1	0	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779