JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCDN_chr1_35552799_35571779	0/0	t0060	1509	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0061	1503	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0062	1514	1	0	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0063	1510	1	0	0	0	1	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0064	1493	1	0	0	1	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0065	1507	1	0	0	0	0	1	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0066	1501	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0067	1504	1	1	0	0	0	0	copy fasta	NCDN	chr1	35552799	35571779
NCDN_chr1_35552799_35571779	0/0	t0068	1509	1	0	0	0	1	0	copy fasta	NCDN	chr1	35552799	35571779
NCEH1_chr3_172625249_172716067	0/0	t0001	3310	52	1	13	28	2	8	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	1/0	t0002	3310	45	25	3	12	0	4	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/1	t0003	3310	39	8	4	16	1	9	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0004	3314	34	3	11	8	7	5	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0005	3310	28	0	0	20	1	7	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0006	3306	20	2	7	8	1	2	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0007	3314	16	1	4	8	1	2	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0008	3306	14	7	0	4	1	2	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0009	3310	13	13	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0010	3310	9	7	2	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0011	3310	6	0	0	6	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0012	3310	5	0	1	0	2	2	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0013	3310	5	0	0	4	0	1	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0014	3308	4	4	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0015	3310	4	4	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0016	3311	3	2	1	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0017	3307	3	0	0	3	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0018	3310	3	3	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0019	3314	2	0	0	0	0	2	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0020	3311	2	1	0	1	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0021	3307	2	0	1	1	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0022	3306	2	0	2	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0023	3314	2	0	0	1	0	1	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0024	3310	1	0	0	0	1	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0025	3314	1	0	0	0	0	1	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0026	3310	1	1	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0027	3306	1	0	0	1	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0028	3311	1	1	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0029	3306	1	0	0	1	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0030	3310	1	1	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0031	3306	1	0	0	0	1	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0032	3306	1	1	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0033	3310	1	0	1	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0034	3310	1	0	0	0	0	1	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0035	3310	1	1	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0036	3310	1	0	0	1	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0037	3310	1	1	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0038	3306	1	0	0	0	0	1	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0039	3310	1	1	0	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0040	3306	1	0	1	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCEH1_chr3_172625249_172716067	0/0	t0041	3307	1	0	1	0	0	0	copy fasta	NCEH1	chr3	172625249	172716067