JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCEH1_chr3_172625249_172716067	0/0	t0042	3310	1	0	0	1	0	0	copy fasta	NCEH1	chr3	172625249	172716067
NCF1_chr7_74769011_74794315	0/0	t0001	177	293	78	47	132	11	25	copy fasta	NCF1	chr7	74769011	74794315
NCF1_chr7_74769011_74794315	1/1	t0002	177	37	8	13	6	1	7	copy fasta	NCF1	chr7	74769011	74794315
NCF2_chr1_183550562_183595459	0/1	t0001	687	314	86	59	139	6	23	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	t0002	690	63	2	11	26	8	16	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	1/0	t0003	687	18	4	6	0	4	3	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	t0004	687	6	6	0	0	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	t0005	684	4	0	0	4	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF2_chr1_183550562_183595459	0/0	t0006	687	1	0	0	1	0	0	copy fasta	NCF2	chr1	183550562	183595459
NCF4_chr22_36856006_36883015	1/1	t0001	359	406	84	81	176	17	46	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	t0002	359	18	0	1	12	1	4	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	t0003	359	8	8	0	0	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	t0004	359	1	0	0	1	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCF4_chr22_36856006_36883015	0/0	t0005	359	1	0	0	1	0	0	copy fasta	NCF4	chr22	36856006	36883015
NCK1_chr3_136857208_136956606	0/1	t0001	3315	128	27	26	43	7	24	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	1/0	t0002	3318	57	19	11	14	4	8	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0003	3318	25	5	4	12	1	3	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0004	3315	4	4	0	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0005	3316	4	2	2	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0006	3318	3	3	0	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0007	3318	2	2	0	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0008	3318	1	0	0	1	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0009	3318	1	1	0	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0010	3315	1	0	0	0	0	1	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0011	3315	1	0	0	1	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0012	3315	1	1	0	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0013	3315	1	0	0	1	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0014	3315	1	1	0	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0015	3315	1	0	1	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK1_chr3_136857208_136956606	0/0	t0016	3315	1	1	0	0	0	0	copy fasta	NCK1	chr3	136857208	136956606
NCK2_chr2_105739912_105899272	0/0	t0001	1530	96	29	15	42	2	8	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0002	1522	57	2	16	34	1	4	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0003	1532	39	3	7	24	1	4	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/1	t0004	1532	36	0	6	21	2	6	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0005	1532	14	3	2	1	3	5	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0006	1522	12	0	4	6	1	1	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0007	1522	9	8	1	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	1/0	t0008	1524	9	1	4	3	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0009	1532	6	2	0	4	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0010	1528	6	4	0	2	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0011	1532	5	1	1	0	1	2	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0012	1532	4	0	0	4	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0013	1530	4	4	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0014	1534	3	1	1	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0015	1522	3	3	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0016	1528	3	0	0	1	1	1	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0017	1511	2	1	1	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0018	1534	2	2	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0019	1530	2	1	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0020	1530	2	0	0	0	0	2	copy fasta	NCK2	chr2	105739912	105899272