JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCK2_chr2_105739912_105899272	0/0	t0021	1528	2	0	2	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0022	1511	1	1	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0023	1511	1	1	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0024	1513	1	0	0	0	0	1	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0025	1522	1	1	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0026	1522	1	0	0	0	0	1	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0027	1532	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0028	1530	1	1	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0029	1528	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0030	1532	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0031	1528	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0032	1522	1	0	0	0	0	1	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0033	1522	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0034	1530	1	1	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0035	1532	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0036	1530	1	1	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0037	1530	1	1	0	0	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0038	1534	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCK2_chr2_105739912_105899272	0/0	t0039	1532	1	0	0	1	0	0	copy fasta	NCK2	chr2	105739912	105899272
NCKAP1L_chr12_54492752_54553243	0/1	t0001	5604	77	11	21	18	9	17	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0002	5599	40	0	8	27	0	5	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0003	5606	28	2	2	21	0	3	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0004	5600	25	13	5	1	3	3	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	1/0	t0005	5597	25	15	6	2	0	1	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0006	5602	12	10	0	2	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0007	5600	11	1	0	10	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0008	5600	9	0	4	5	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0009	5600	6	0	1	5	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0010	5600	6	0	0	6	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0011	5600	6	0	1	5	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0012	5598	5	5	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0013	5603	5	0	2	3	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0014	5602	5	5	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0015	5603	4	4	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0016	5608	4	2	1	0	0	1	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0017	5599	4	2	1	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0018	5603	4	0	1	3	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0019	5605	3	1	0	2	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0020	5604	3	0	0	3	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0021	5599	3	2	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0022	5595	2	2	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0023	5607	2	0	0	2	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0024	5601	2	1	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0025	5604	2	1	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0026	5596	2	2	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0027	5602	2	2	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0028	5604	2	0	2	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0029	5603	2	0	1	0	1	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0030	5599	2	2	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0031	5595	2	2	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243