JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCKAP1L_chr12_54492752_54553243	0/0	t0032	5597	2	2	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0033	5604	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0034	5597	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0035	5604	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0036	5604	1	0	0	0	0	1	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0037	5604	1	0	0	0	0	1	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0038	5606	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0039	5600	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0040	5597	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0041	5601	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0042	5602	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0043	5606	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0044	5607	1	0	0	0	0	1	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0045	5604	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0046	5601	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0047	5603	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0048	5604	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0049	5609	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0050	5603	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0051	5600	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0052	5596	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0053	5605	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0054	5610	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0055	5609	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0056	5597	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0057	5601	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0058	5605	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0059	5603	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0060	5602	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0061	5608	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0062	5595	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0063	5608	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0064	5610	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0065	5604	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0066	5604	1	0	0	0	1	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0067	5599	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0068	5599	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0069	5597	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0070	5595	1	1	0	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0071	5601	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0072	5599	1	0	1	0	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0073	5598	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0074	5602	1	0	0	1	0	0	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1L_chr12_54492752_54553243	0/0	t0075	5604	1	0	0	0	0	1	copy fasta	NCKAP1L	chr12	54492752	54553243
NCKAP1_chr2_182904115_183043457	0/0	t0001	16963	12	0	2	8	0	2	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0002	16985	10	7	0	3	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0003	16946	9	4	0	1	1	3	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0004	16951	8	8	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0005	16964	6	0	3	0	0	3	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0006	16951	6	2	1	1	0	2	copy fasta	NCKAP1	chr2	182904115	183043457