JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCKAP1_chr2_182904115_183043457	0/0	t0057	16963	1	0	0	0	0	1	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0058	16947	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0059	16952	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0060	16959	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0061	16955	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0062	16952	1	0	1	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0063	16959	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0064	16955	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0065	16948	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0066	16963	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0067	16957	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0068	16953	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0069	16954	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0070	16948	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0071	16972	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0072	16968	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0073	16960	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0074	16964	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0075	16985	1	0	1	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0076	16986	1	0	1	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0077	16980	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0078	16988	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0079	16987	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0080	16983	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0081	16989	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0082	16993	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0083	16990	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0084	16989	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0085	16981	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0086	16976	1	0	1	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0087	16967	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0088	16989	1	0	0	0	0	1	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0089	16987	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0090	16986	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0091	16984	1	0	1	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0092	16982	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0093	16981	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0094	16984	1	0	0	0	1	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0095	16984	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0096	16988	1	0	0	0	0	1	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0097	16992	1	0	0	1	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0098	16984	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0099	16983	1	0	0	0	0	1	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0100	16988	1	0	1	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0101	16988	1	0	1	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0102	16946	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0103	16946	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0104	16946	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	1/0	t0105	16946	1	0	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0106	16946	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457