JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCKAP1_chr2_182904115_183043457	0/0	t0107	16947	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0108	16946	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0109	16962	1	1	0	0	0	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP1_chr2_182904115_183043457	0/0	t0110	16949	1	0	0	0	1	0	copy fasta	NCKAP1	chr2	182904115	183043457
NCKAP5L_chr12_49786152_49833413	0/0	t0001	878	243	51	39	126	7	20	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	1/1	t0002	878	96	22	26	27	5	14	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	t0003	878	14	9	0	1	2	2	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	t0004	878	10	9	1	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	t0005	878	2	0	0	2	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5L_chr12_49786152_49833413	0/0	t0006	867	1	1	0	0	0	0	copy fasta	NCKAP5L	chr12	49786152	49833413
NCKAP5_chr2_132666788_133573463	0/0	t0001	1879	47	26	9	12	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	t0002	1881	9	9	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	t0003	1879	5	4	1	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	t0004	1879	4	4	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	t0005	1881	2	2	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	t0006	1881	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	t0007	1879	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKAP5_chr2_132666788_133573463	0/0	t0008	1879	1	1	0	0	0	0	copy fasta	NCKAP5	chr2	132666788	133573463
NCKIPSD_chr3_48668844_48690915	0/1	t0001	809	227	55	42	92	7	30	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	1/0	t0002	809	78	32	13	17	9	6	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	t0003	809	1	1	0	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	t0004	809	1	0	0	1	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	t0005	809	1	0	1	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	t0006	831	1	1	0	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCKIPSD_chr3_48668844_48690915	0/0	t0007	809	1	1	0	0	0	0	copy fasta	NCKIPSD	chr3	48668844	48690915
NCLN_chr19_3180930_3214575	1/0	t0001	1989	106	28	35	17	7	18	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/1	t0002	1989	78	4	11	54	0	8	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0003	1989	76	22	12	35	6	1	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0004	1989	44	0	4	36	0	4	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0005	1989	20	1	2	14	0	3	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0006	1989	17	0	6	0	4	7	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0007	1988	9	9	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0008	1989	9	9	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0009	1989	7	7	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0010	1989	6	0	0	6	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0011	1989	5	5	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0012	1989	5	0	0	5	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0013	1989	2	1	1	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0014	1989	2	2	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0015	1989	2	0	0	2	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0016	1989	1	0	1	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0017	1989	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0018	1989	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0019	1989	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0020	1989	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0021	1989	1	0	0	0	1	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0022	1988	1	0	1	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0023	1988	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0024	1989	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0025	1989	1	0	1	0	0	0	copy fasta	NCLN	chr19	3180930	3214575