JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCLN_chr19_3180930_3214575	0/0	t0026	1989	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0027	1989	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0028	1989	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0029	1989	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0030	1989	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0031	1989	1	1	0	0	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0032	1989	1	0	0	0	0	1	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0033	1989	1	0	0	0	0	1	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0034	1989	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0035	1989	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0036	1989	1	0	0	0	0	1	copy fasta	NCLN	chr19	3180930	3214575
NCLN_chr19_3180930_3214575	0/0	t0037	1989	1	0	0	1	0	0	copy fasta	NCLN	chr19	3180930	3214575
NCL_chr2_231448531_231469484	1/1	t0001	1792	133	30	24	56	5	16	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0002	1793	113	11	9	81	0	12	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0003	1791	48	19	14	7	3	5	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0004	1790	45	0	4	37	0	4	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0005	1790	23	8	10	0	4	1	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0006	1789	13	0	5	0	1	7	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0007	1792	12	0	0	12	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0008	1794	11	0	0	10	0	1	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0009	1793	10	9	1	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0010	1793	10	0	5	3	2	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0011	1792	7	0	0	5	1	1	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0012	1793	5	0	0	5	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0013	1792	4	3	1	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0014	1791	3	3	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0015	1793	2	0	0	2	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0016	1792	2	0	0	2	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0017	1790	2	0	2	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0018	1790	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0019	1790	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0020	1792	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0021	1792	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0022	1792	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0023	1791	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0024	1791	1	0	0	1	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0025	1793	1	0	0	0	0	1	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0026	1793	1	0	0	1	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0027	1794	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0028	1794	1	0	1	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0029	1791	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0030	1791	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0031	1793	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0032	1792	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0033	1790	1	0	0	1	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0034	1793	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0035	1792	1	0	0	1	0	0	copy fasta	NCL	chr2	231448531	231469484
NCL_chr2_231448531_231469484	0/0	t0036	1793	1	1	0	0	0	0	copy fasta	NCL	chr2	231448531	231469484
NCMAP_chr1_24551087_24614328	1/0	t0001	3672	136	23	32	57	8	15	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/1	t0002	3673	85	0	17	49	4	14	copy fasta	NCMAP	chr1	24551087	24614328