JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCMAP_chr1_24551087_24614328	0/0	t0003	3672	73	17	14	28	4	10	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0004	3650	19	17	2	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0005	3673	18	0	3	15	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0006	3673	14	5	3	4	1	1	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0007	3671	11	0	1	9	0	1	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0008	3673	10	10	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0009	3672	3	3	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0010	3673	3	2	0	1	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0011	3673	3	3	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0012	3673	3	1	2	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0013	3651	3	3	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0014	3674	2	2	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0015	3673	2	2	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0016	3671	1	1	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0017	3673	1	1	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0018	3672	1	1	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0019	3673	1	0	0	1	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0020	3672	1	0	0	1	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0021	3673	1	0	0	1	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0022	3705	1	0	0	1	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0023	3673	1	0	0	1	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0024	3673	1	0	0	0	0	1	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0025	3674	1	0	0	1	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0026	3672	1	0	0	0	1	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0027	3672	1	1	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0028	3672	1	0	0	0	0	1	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0029	3672	1	0	0	1	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0030	3672	1	0	0	0	0	1	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0031	3650	1	1	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCMAP_chr1_24551087_24614328	0/0	t0032	3673	1	1	0	0	0	0	copy fasta	NCMAP	chr1	24551087	24614328
NCOA1_chr2_24486254_24775702	0/1	t0001	3094	144	16	26	87	3	11	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0002	3101	47	25	13	2	2	5	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0003	3097	34	6	2	22	2	2	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0004	3094	34	0	8	18	4	4	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0005	3093	8	0	1	4	1	2	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0006	3096	8	3	2	0	0	3	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0007	3095	7	2	4	1	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0008	3095	5	0	0	5	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0009	3097	3	3	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0010	3095	3	3	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	1/0	t0011	3056	2	0	0	0	1	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0012	3093	2	2	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0013	3096	2	0	0	1	0	1	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0014	3094	2	2	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0015	3093	2	2	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0016	3102	2	2	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0017	3057	1	0	1	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0018	3094	1	0	1	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0019	3094	1	0	0	1	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0020	3094	1	0	0	1	0	0	copy fasta	NCOA1	chr2	24486254	24775702