JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCOA1_chr2_24486254_24775702	0/0	t0021	3093	1	0	0	1	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0022	3093	1	0	0	0	1	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0023	3097	1	0	0	1	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0024	3095	1	1	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA1_chr2_24486254_24775702	0/0	t0025	3094	1	1	0	0	0	0	copy fasta	NCOA1	chr2	24486254	24775702
NCOA2_chr8_70104782_70408808	1/1	t0001	4036	158	34	25	74	3	20	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0002	4036	48	9	9	26	1	3	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0003	4036	33	0	4	25	0	4	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0004	4036	13	0	0	13	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0005	4036	10	10	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0006	4037	9	4	0	5	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0007	4036	6	5	1	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0008	4036	5	5	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0009	4036	5	5	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0010	4036	5	5	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0011	4036	4	0	1	0	0	3	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0012	4036	4	4	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0013	4036	2	0	0	2	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0014	4036	2	0	0	0	0	2	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0015	4036	2	0	0	2	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0016	4036	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0017	4034	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0018	4036	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0019	4034	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0020	4036	1	0	1	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0021	4036	1	0	1	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0022	4036	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0023	4036	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0024	4036	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0025	4034	1	0	0	0	0	1	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0026	4036	1	0	0	0	0	1	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0027	4036	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0028	4036	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0029	4037	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0030	4036	1	1	0	0	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA2_chr8_70104782_70408808	0/0	t0031	4036	1	0	0	1	0	0	copy fasta	NCOA2	chr8	70104782	70408808
NCOA3_chr20_47496887_47661872	0/0	t0001	3687	87	15	15	41	3	13	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0002	3687	52	7	13	21	4	7	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/1	t0003	3687	46	6	11	14	7	7	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0004	3692	16	1	2	7	0	6	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0005	3687	13	0	0	13	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0006	3690	8	0	4	4	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0007	3690	8	6	2	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0008	3690	7	5	2	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0009	3687	6	6	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0010	3688	6	0	1	4	0	1	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0011	3689	6	5	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0012	3689	5	5	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0013	3689	5	5	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0014	3687	5	4	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872