JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCOA3_chr20_47496887_47661872	0/0	t0015	3688	4	3	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0016	3689	4	4	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0017	3689	4	1	1	2	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0018	3688	3	0	0	3	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0019	3687	2	1	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0020	3687	2	0	0	2	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0021	3687	2	0	1	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0022	3690	2	1	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	1/0	t0023	3687	1	0	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0024	3689	1	0	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0025	3689	1	0	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0026	3690	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0027	3686	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0028	3688	1	0	0	0	0	1	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0029	3687	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0030	3686	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0031	3690	1	0	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0032	3692	1	0	0	0	0	1	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0033	3688	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0034	3690	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0035	3690	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0036	3691	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0037	3689	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0038	3689	1	0	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0039	3689	1	1	0	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0040	3688	1	0	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0041	3687	1	0	1	0	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0042	3689	1	0	0	0	1	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0043	3690	1	0	0	0	1	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0044	3687	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA3_chr20_47496887_47661872	0/0	t0045	3689	1	0	0	1	0	0	copy fasta	NCOA3	chr20	47496887	47661872
NCOA4_chr10_46000088_46035623	1/0	t0001	1617	355	65	64	174	15	36	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/1	t0002	1617	19	0	2	11	1	4	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0003	1617	14	11	3	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0004	1617	7	7	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0005	1617	4	0	1	2	0	1	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0006	1617	3	0	0	3	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0007	1617	2	1	0	0	0	1	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0008	1617	2	2	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0009	1617	2	2	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0010	1617	1	0	0	1	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0011	1617	1	1	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0012	1617	1	0	0	1	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA4_chr10_46000088_46035623	0/0	t0013	1617	1	1	0	0	0	0	copy fasta	NCOA4	chr10	46000088	46035623
NCOA5_chr20_46055991_46094962	1/0	t0001	1485	298	46	48	158	15	30	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/1	t0002	1485	36	12	3	6	3	11	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	t0003	1485	27	23	4	0	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	t0004	1486	8	0	5	1	0	2	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	t0005	1486	7	7	0	0	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	t0006	1486	2	0	2	0	0	0	copy fasta	NCOA5	chr20	46055991	46094962