JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCOA5_chr20_46055991_46094962	0/0	t0007	1485	1	0	0	1	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	t0008	1486	1	1	0	0	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	t0009	1485	1	1	0	0	0	0	copy fasta	NCOA5	chr20	46055991	46094962
NCOA5_chr20_46055991_46094962	0/0	t0010	1485	1	0	0	0	0	1	copy fasta	NCOA5	chr20	46055991	46094962
NCOA6_chr20_34709774_34830651	1/0	t0001	892	155	46	24	58	8	18	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/1	t0002	889	132	28	32	52	6	13	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	t0003	892	1	1	0	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	t0004	892	1	1	0	0	0	0	copy fasta	NCOA6	chr20	34709774	34830651
NCOA6_chr20_34709774_34830651	0/0	t0005	889	1	0	0	0	0	1	copy fasta	NCOA6	chr20	34709774	34830651
NCOA7_chr6_125785960_125937034	0/1	t0001	3436	91	9	26	33	8	14	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	1/0	t0002	3436	68	12	17	23	5	10	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0003	3425	48	18	3	20	2	5	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0004	3437	21	5	1	15	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0005	3437	7	5	1	1	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0006	3436	5	5	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0007	3436	4	2	0	1	1	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0008	3436	4	0	0	4	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0009	3437	3	0	0	3	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0010	3436	2	2	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0011	3437	2	2	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0012	3436	1	0	0	0	0	1	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0013	3425	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0014	3436	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0015	3436	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0016	3436	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0017	3436	1	0	0	1	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0018	3425	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0019	3425	1	0	0	1	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0020	3425	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0021	3425	1	0	0	1	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0022	3436	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0023	3436	1	0	0	1	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0024	3436	1	0	0	1	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0025	3437	1	0	0	1	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOA7_chr6_125785960_125937034	0/0	t0026	3436	1	1	0	0	0	0	copy fasta	NCOA7	chr6	125785960	125937034
NCOR1_chr17_16024157_16220534	1/1	t0001	3383	110	24	23	46	4	11	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0002	3383	94	20	21	41	4	8	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0003	3391	12	0	5	5	1	1	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0004	3391	8	6	2	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0005	3383	8	7	1	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0006	3383	8	0	6	0	0	2	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0007	3383	7	7	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0008	3383	5	5	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0009	3383	3	3	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0010	3383	3	3	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0011	3383	3	3	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0012	3387	2	2	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0013	3383	2	2	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0014	3383	2	2	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0015	3383	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534