JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCOR1_chr17_16024157_16220534	0/0	t0016	3383	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0017	3391	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0018	3383	1	0	0	1	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0019	3383	1	0	0	0	0	1	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0020	3383	1	0	0	0	1	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0021	3383	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0022	3383	1	0	0	0	0	1	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0023	3383	1	0	0	1	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0024	3387	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0025	3383	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0026	3383	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0027	3383	1	0	1	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0028	3383	1	1	0	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR1_chr17_16024157_16220534	0/0	t0029	3383	1	0	1	0	0	0	copy fasta	NCOR1	chr17	16024157	16220534
NCOR2_chr12_124319415_124572612	1/0	t0001	1457	17	14	1	0	1	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0002	1459	15	0	6	8	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0003	1462	14	2	4	4	0	4	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0004	1456	11	0	1	10	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0005	1459	10	5	1	3	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0006	1456	8	0	4	4	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0007	1462	8	4	2	2	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0008	1459	7	0	2	4	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/1	t0009	1459	6	0	2	1	0	2	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0010	1463	6	2	0	4	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0011	1456	5	2	0	3	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0012	1457	5	0	0	4	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0013	1460	5	0	2	2	1	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0014	1460	5	4	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0015	1461	5	2	2	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0016	1457	4	0	0	4	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0017	1454	4	3	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0018	1463	4	1	1	1	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0019	1457	3	0	1	1	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0020	1460	3	0	1	1	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0021	1454	3	2	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0022	1458	3	3	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0023	1459	3	0	1	1	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0024	1460	3	0	1	2	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0025	1457	3	2	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0026	1460	3	1	0	1	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0027	1461	3	2	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0028	1461	3	3	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0029	1454	2	0	0	0	0	2	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0030	1457	2	0	1	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0031	1457	2	1	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0032	1458	2	0	0	1	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0033	1460	2	1	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0034	1459	2	0	1	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0035	1459	2	0	0	0	1	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0036	1460	2	1	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612