JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCOR2_chr12_124319415_124572612	0/0	t0037	1460	2	1	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0038	1461	2	0	0	2	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0039	1461	2	0	1	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0040	1459	2	0	0	2	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0041	1457	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0042	1454	1	0	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0043	1458	1	0	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0044	1458	1	0	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0045	1459	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0046	1460	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0047	1457	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0048	1458	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0049	1459	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0050	1454	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0051	1454	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0052	1457	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0053	1457	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0054	1460	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0055	1454	1	0	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0056	1457	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0057	1457	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0058	1457	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0059	1460	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0060	1462	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0061	1462	1	0	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0062	1462	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0063	1460	1	0	0	1	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0064	1460	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0065	1457	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0066	1461	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0067	1461	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0068	1463	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0069	1460	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0070	1457	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0071	1460	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0072	1461	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0073	1461	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0074	1462	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0075	1462	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0076	1457	1	0	1	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0077	1457	1	0	0	0	0	1	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0078	1462	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0079	1460	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0080	1466	1	1	0	0	0	0	copy fasta	NCOR2	chr12	124319415	124572612
NCOR2_chr12_124319415_124572612	0/0	t0081	1474	1	0	0	0	1	0	copy fasta	NCOR2	chr12	124319415	124572612
NCR1_chr19_54901148_54918073	0/0	t0001	243	158	25	46	47	9	31	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	t0002	241	93	2	9	75	0	7	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	t0003	241	87	19	12	53	1	2	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/1	t0004	240	51	30	7	10	1	2	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	t0005	242	30	12	3	5	4	6	copy fasta	NCR1	chr19	54901148	54918073