JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCR1_chr19_54901148_54918073	0/0	t0006	242	22	0	4	18	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	t0007	240	8	8	0	0	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	t0008	241	3	2	1	0	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	t0009	243	2	0	0	2	0	0	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	t0010	241	1	0	0	0	0	1	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	t0011	244	1	0	0	0	0	1	copy fasta	NCR1	chr19	54901148	54918073
NCR1_chr19_54901148_54918073	0/0	t0012	243	1	0	0	0	1	0	copy fasta	NCR1	chr19	54901148	54918073
NCR2_chr6_41330608_41355889	0/0	t0001	295	321	43	62	166	15	35	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	1/1	t0002	295	112	53	16	27	2	12	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	t0003	295	2	2	0	0	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	t0004	295	1	0	0	0	1	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	t0005	295	1	0	0	1	0	0	copy fasta	NCR2	chr6	41330608	41355889
NCR2_chr6_41330608_41355889	0/0	t0006	295	1	0	0	0	0	1	copy fasta	NCR2	chr6	41330608	41355889
NCR3LG1_chr11_17346800_17382341	0/0	t0001	5000	83	2	14	53	4	10	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	1/0	t0002	5000	72	1	17	40	5	8	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0003	4994	66	22	11	27	0	6	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0004	5000	30	28	2	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0005	4999	18	0	13	2	2	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0006	4995	9	2	0	3	0	4	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0007	5001	9	0	3	5	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/1	t0008	4976	9	0	3	3	0	2	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0009	4997	5	0	0	5	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0010	5001	5	0	1	4	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0011	4993	4	1	0	3	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0012	4994	4	0	1	0	2	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0013	5001	3	3	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0014	5000	3	2	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0015	5002	3	3	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0016	5002	3	3	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0017	4994	3	2	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0018	4994	2	0	2	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0019	5000	2	0	2	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0020	5001	2	2	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0021	4996	2	0	0	0	0	2	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0022	4993	2	2	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0023	4994	1	0	0	0	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0024	4994	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0025	4992	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0026	4994	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0027	4995	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0028	4995	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0029	4994	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0030	4994	1	0	0	0	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0031	4994	1	0	0	0	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0032	4999	1	0	0	0	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0033	5000	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0034	5000	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0035	5000	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0036	5000	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0037	5000	1	0	0	0	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341