JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCR3LG1_chr11_17346800_17382341	0/0	t0038	4999	1	0	0	0	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0039	5000	1	0	0	0	0	1	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0040	5000	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0041	5000	1	0	0	0	1	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0042	5001	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0043	5000	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0044	5000	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0045	5000	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0046	5002	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0047	5004	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0048	4975	1	0	1	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0049	5005	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0050	5002	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0051	5000	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0052	5002	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0053	4999	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0054	5000	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0055	5000	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0056	5000	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0057	5000	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0058	4995	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0059	5004	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0060	5001	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0061	5002	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0062	5000	1	0	0	1	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3LG1_chr11_17346800_17382341	0/0	t0063	5000	1	1	0	0	0	0	copy fasta	NCR3LG1	chr11	17346800	17382341
NCR3_chr6_31583895_31598006	0/0	t0001	458	341	75	55	160	15	36	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	t0002	458	54	3	11	32	2	6	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/1	t0003	458	32	2	9	17	0	3	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	t0004	458	4	2	2	0	0	0	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	t0005	455	3	1	1	0	0	1	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	t0006	458	2	1	0	0	1	0	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	t0007	458	1	1	0	0	0	0	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	t0008	458	1	1	0	0	0	0	copy fasta	NCR3	chr6	31583895	31598006
NCR3_chr6_31583895_31598006	0/0	t0009	458	1	0	0	1	0	0	copy fasta	NCR3	chr6	31583895	31598006
NCS1_chr9_130167404_130242303	0/0	t0001	4594	36	0	9	25	2	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0002	4594	15	0	5	0	4	6	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0003	4593	13	0	1	6	3	3	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0004	4595	10	0	5	4	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0005	4594	7	0	0	4	0	3	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0006	4592	6	0	0	6	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0007	4593	6	0	0	3	0	3	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0008	4593	5	0	2	3	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0009	4594	4	0	3	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0010	4594	4	0	2	1	1	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0011	4595	4	0	4	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0012	4594	4	0	2	0	0	2	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0013	4593	4	0	0	4	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0014	4594	4	0	0	4	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	1/0	t0015	4592	4	0	0	2	0	1	copy fasta	NCS1	chr9	130167404	130242303