JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NCS1_chr9_130167404_130242303	0/0	t0016	4594	4	0	2	2	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0017	4593	4	1	0	2	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0018	4595	3	2	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0019	4594	3	0	0	3	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0020	4595	3	0	0	2	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0021	4593	3	3	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0022	4592	3	1	1	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0023	4593	3	1	2	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0024	4595	3	1	1	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0025	4594	3	0	3	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0026	4594	2	0	0	2	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0027	4593	2	2	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0028	4593	2	2	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0029	4594	2	2	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0030	4595	2	0	0	0	2	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0031	4594	2	0	2	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0032	4594	2	1	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0033	4594	2	0	2	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0034	4592	2	0	0	2	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0035	4593	2	0	0	2	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0036	4593	2	0	2	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0037	4593	2	0	0	2	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0038	4594	2	0	0	2	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0039	4593	2	0	2	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0040	4592	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0041	4593	1	0	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0042	4594	1	0	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0043	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0044	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0045	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0046	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0047	4593	1	0	0	1	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0048	4595	1	0	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0049	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0050	4594	1	0	1	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0051	4594	1	0	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0052	4594	1	0	0	0	0	1	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0053	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0054	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0055	4595	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0056	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0057	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0058	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0059	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0060	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0061	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0062	4594	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0063	4596	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0064	4595	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303
NCS1_chr9_130167404_130242303	0/0	t0065	4593	1	1	0	0	0	0	copy fasta	NCS1	chr9	130167404	130242303